Database overview and statistics¶
Projects and runs¶
So far, GMrepo contains:
- Meta data for in total
71,642runs (samples), belonging to
- Raw data have been processed for in total
53,700runs (samples), belonging to
- Among the processed data, microbe abundance data are available for in total
37,550runs (samples), belonging to
- In total
16,150runs (samples), belonging to
failed our QC processes.
In addition, GMrepo
also includes information on
76 projects whose raw data were not processed, including in total
31,381 runs/samples, due to various reasons, mostly the
lack of phenotype information.
Associated human diseases¶
arranged all runs (samples) into
131 associated human diseases; in addition, the distributions of gut microbes
in healthy controls are also presented.
In all of the
37,550 runs (samples) collected in GMrepo, there are:
- in total
7,088species , belonging to
- among which,
2,747species, belonging to
895genera, can be found:
- in >=2 samples
- with median relative abundances >=0.01%.
Please consult the "All taxa" page for details.